The 5′-3′ Distance of RNA Secondary Structures
نویسندگان
چکیده
منابع مشابه
Expected distance between terminal nucleotides of RNA secondary structures.
In "The ends of a large RNA molecule are necessarily close", Yoffe et al. (Nucleic Acids Res 39(1):292-299, 2011) used the programs RNAfold [resp. RNAsubopt] from Vienna RNA Package to calculate the distance between 5' and 3' ends of the minimum free energy secondary structure [resp. thermal equilibrium structures] of viral and random RNA sequences. Here, the 5'-3' distance is defined to be the...
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We prove two topological theorems in physical chemistry. Namely, we introduce a hybrid of transverse and tangential measures on train tracks to prove sphericity of various simplicial complexes which arise from certain idealized models of physical chemistry. These complexes are at once identified with Thurston’s space of projective geodesic laminations on an ideal polygon and with the analogue o...
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ژورنال
عنوان ژورنال: Journal of Computational Biology
سال: 2012
ISSN: 1066-5277,1557-8666
DOI: 10.1089/cmb.2011.0301